https://www.walmart.com/ip/Popsicle-Rainbow-Big-Stick-3-5-oz/198225061 POPSICLE- a software suite to determine population structure and to establish genotype-phenotype associations using Next-generation sequencing data niaidlogo





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POPSICLE Package  

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Used Case

 Windows Users: When java is installed on your machine, the path variable names must all be automatically set up. However for any reason they are not set up, then check the following.
  1. Windows 7 users must have the JAVA directory at the location: C:\Program Files (x86)\Java or at C:\Program Files\Java. XP users should have it at C:\Program Files\Java. If you have several versions installed over time, each of those versions will exist as a directory within the Java directory. 
  2. click on start (or) windows logo at the bottom left of your windows screen and right click on computer (my computer). Click on advanced system settings and then on Environmental variables on the popup window. and check if JAVA_HOME is setup to the latest java home directory and path variable is setup as shown below:
check1check2check3check4
If these entries do not exist, please create these environmental variables. 
Test if you can issue java commands from the command line by opening a command line and typing java -version

Linux Users: Install the version of java supported by your linux version. Set the JAVA_HOME environmental variable to the java home directory and append java bin directory path to the path variable. You should now be able to run java from command line. For most linux machines, java is already installed. If the version is older than 1.5x, update  your java to 1.5x or later.

MAC Users: Java updates are done automatically. Make sure you have java 1.5 or later. Perform software update as necessary

CITATION: Jahangheer S. Shaik, Asis Khan and Michael E. Grigg, "POPSICLE: A Software Suite to Study Population Structure and Ancestral Determinants of Phenotypes using Whole genome Sequencing Data", submitted to PLoS special edition