https://www.walmart.com/ip/Popsicle-Rainbow-Big-Stick-3-5-oz/198225061 POPSICLE- a software suite to determine population structure and to establish genotype-phenotype associations using Next-generation sequencing data niaidlogo





MAIN

INDEX

ANALYTICAL PIPELINE

CONTACT

SYSTEM REQUIREMENTS

POPSICLE Package  

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Used Case

 1) FindSomies
2) Find Alleles
3) GenerateInputFromAlleleFiles
3) RemoveInsignificantLoci
4) RemoveLociWithLotsOfMissingData
5) FindDivergenceFromBaseline
6) SampleBaseLineFile
7) Convert2ARFFformat
8) PerformKmeansClustering
9) POPSICLEIntermediate
10) PolishPosicle
11) ArrangePopsicleByClustersFormed
12) ConvertPopsicle2CircosHighlights
13) FindGenotypePhenotypeBootstrap
14) findAnnotations

CITATION: Jahangheer S. Shaik, Asis Khan and Michael E. Grigg, "POPSICLE: A Software Suite to Study Population Structure and Ancestral Determinants of Phenotypes using Whole genome Sequencing Data", submitted to PLoS special edition