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POPSICLE- a software suite to determine population structure and to establish genotype-phenotype associations using Next-generation sequencing data |  |
MAIN INDEX ANALYTICAL PIPELINE CONTACT SYSTEM REQUIREMENTS POPSICLE Package Download Manual pages in HTML format Used Case |
Find annotations for regions of interest Prerequisites
It finds annotations for regions with strong association between block genotypes and phenotypes How to run it? java -jar LPDtools.jar findAnnotations -i genotypePhenotypeFile -o outputFile -j AnnotationFile.gff Here, -i is the genotype-phenotype file generated using the utility FindGenotypePhenotypeBootstrap of POPSICLE. -j is the annotation file in .gff format Output  |
| CITATION: Jahangheer S. Shaik, Asis Khan and Michael E. Grigg, "POPSICLE: A Software Suite to Study Population Structure and Ancestral Determinants of Phenotypes using Whole genome Sequencing Data", submitted to PLoS special edition |